PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00062.1.g00280.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 428aa    MW: 47423.6 Da    PI: 7.9776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00062.1.g00280.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17234280252
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Zpz_sc00062.1.g00280.1.am.mk 234 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 280
                                   69****998.**********843...6*********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-31234292IPR001471AP2/ERF domain
PfamPF008475.6E-12234280IPR001471AP2/ERF domain
SMARTSM003801.7E-35234297IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-21234292IPR016177DNA-binding domain
PROSITE profilePS5103222.998234291IPR001471AP2/ERF domain
PRINTSPR003678.4E-10235246IPR001471AP2/ERF domain
CDDcd000181.13E-18235293No hitNo description
PRINTSPR003678.4E-10257273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVVKNQRLDP ANSGYISSWV AKGCVKSDAG QRGLGVDSDH ETIESSTTPG RAGRGWRRSN  60
WFFYLDPRAP CFCRCRHEQW TLLLPQGPRN LFNFDWWMMC RTTIIGRARH TGGFYLRSFL  120
LNSGDEIDDR ASIFTSSCDG NVGQTRIAPA RPDALLLCAH CTAFLTRAYA WPAPATATTG  180
SSFPRSFAIL TMPDSDVTSP PAPSPLGTVE KRGCRRGGNG NSGCGGGSSK RHPTYRGVRM  240
RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PETAASLPRP  300
AXXXRPRAPR PWTWTTATWA ARQCRQQQCG QQAQGQAVDD DEELEEIVEL PPVDEECFAE  360
DGLTFRTPFH VDSDVAQPWY EMAWTAQAGV AAQDYEMVVP GLEQDHRLRT LTDGNEVFSG  420
FGSLLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-14235291663ATERF1
3gcc_A8e-14235291663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036821e-76AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-76AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659689.12e-41PREDICTED: ethylene-responsive transcription factor TINY isoform X3
TrEMBLM0V2D21e-50M0V2D2_HORVD; Uncharacterized protein
STRINGMLOC_17203.14e-50(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4874222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-30ERF family protein